Selected Publications
Choudhury M., Fu T., Amoah K., Jun H.K., Chan T.W., Park S., Walker D., Bahn J.H. Xiao X.
Widespread RNA hypoediting in schizophrenia and its relevance to mitochondrial function. Sci. Adv. (2023). DOI: 10.1126/sciadv.ade9997
Liu, Z., Quinones-Valdez, G., Fu, T., Huang E., Choudhury M., Reese F., Mortazavi A., Xiao X.
L-GIREMI uncovers RNA editing sites in long-read RNA-seq. Genome Biol 24, 171 (2023).
Yamamoto R., Liu Z., Choudhury M., Xinshu Xiao,
dsRID: in silico identification of dsRNA regions using long-read RNA-seq data. Bioinformatics, Volume 39, Issue 11 (2023), DOI: https://doi.org/10.1093/bioinformatics/btad649
Other Publications
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Kahn A.H., Bagley J.R., LaPierre N., Gonzalez-Figueroa C., Spencer T.C., Choudhury M., Xiao X., Eskin E., Jentsch J.D., Smith D.J. Genetic pathways regulating the longitudinal acquisition of cocaine self-administration in a panel of inbred and recombinant inbred mice. Cell Reports. (2023) DOI: https://doi.org/10.1016/j.celrep.2023.112856
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Choudhury M., Yamamoto R., Xiao X. The genetic landscape of RNA editing and other aspects of gene expression in schizophrenia. (Under Review)
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Choudhury M. Computational Analysis of RNA Editing in Brain Diseases. UCLA Electronic Theses and Dissertations. (2022) (Advisor: Xiao X.) Dissertation Link.
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Choudhury M., Ramsey SA. Identifying Cell Type-Specific Transcription Factors by Integrating ChIP-seq and eQTL Data-Application to Monocyte Gene Regulation. Gene Regulation and Systems Biology. (2016) doi:10.4137/GRSB.S40768
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Choudhury M. The Development and Application of a Systems Biology Approach to Mapping Monocyte Gene Regulatory NetworksThe Development and Application of a Systems Biology Approach to Mapping Monocyte Gene Regulatory Networks. Oregon State University Honors College (2016) (Advisor: Ramsey S.) Dissertation Link.
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